sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A642-A704
X
>3F1E-A642-A704
X
>3KNI-A1226-A757
X
>3OGE-A1259-A1235
X
>3OGY-A1259-A1235
X
>3OHY-A1259-A1235
X
>3OI0-A1259-A1235
X
>3OHD-A642-A704
X
>2J03-A1220-A757
X
>2J01-A1220-A757
X
</seq>
<hsp>
0 1:0.00510775586858
0 2:0.162050204001
0 3:0.999999235222
0 4:0.99880761083
0 5:0.988242403941
0 6:0.987419330776
0 7:0.12131256601
0 8:0.303800005853
0 9:0.305436762916
1 2:0.159035469152
1 3:0.997337111794
1 4:0.996145274912
1 5:0.985718594301
1 6:0.984911709783
1 7:0.121441306965
1 8:0.303164711016
1 9:0.304806799819
2 3:0.922123891471
2 4:0.920948094026
2 5:0.916057477016
2 6:0.915676733549
2 7:0.224226486766
2 8:0.264482417578
2 9:0.265808333388
3 4:0.00422621064736
3 5:0.0518230810314
3 6:0.0545455185439
3 7:0.996981262873
3 8:0.990515631985
3 9:0.990350663487
4 5:0.0521106852671
4 6:0.054610718049
4 7:0.995582435352
4 8:0.989292689391
4 9:0.989121288745
5 6:0.00485561833565
5 7:0.982264764166
5 8:0.972975123236
5 9:0.972851353436
6 7:0.980975439405
6 8:0.971683699082
6 9:0.971547522585
7 8:0.289958172057
7 9:0.290269817348
8 9:0.00628724730084
</hsp>