ClaRNA

Doublet Group distance statistics: 51180

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C2 A 0, 0.002, 0.006, 0.011, 0.013 max_d=0.013 avg_d=0.006 std_dev=0.005
C6 A 0, 0.003, 0.008, 0.013, 0.014 max_d=0.014 avg_d=0.008 std_dev=0.005
C1' A 0, 0.004, 0.010, 0.017, 0.017 max_d=0.017 avg_d=0.010 std_dev=0.007
N3 A 0, 0.003, 0.010, 0.017, 0.018 max_d=0.018 avg_d=0.010 std_dev=0.007
N2 A 0, 0.004, 0.012, 0.020, 0.021 max_d=0.021 avg_d=0.012 std_dev=0.008
C5 A 0, 0.005, 0.015, 0.025, 0.026 max_d=0.026 avg_d=0.015 std_dev=0.010
N9 A 0, 0.003, 0.014, 0.025, 0.028 max_d=0.028 avg_d=0.014 std_dev=0.011
N1 A 0, 0.003, 0.016, 0.028, 0.028 max_d=0.028 avg_d=0.016 std_dev=0.013
C4 A 0, 0.003, 0.016, 0.029, 0.032 max_d=0.032 avg_d=0.016 std_dev=0.013
O6 A 0, 0.012, 0.030, 0.049, 0.047 max_d=0.047 avg_d=0.030 std_dev=0.018
N7 A 0, 0.007, 0.030, 0.052, 0.052 max_d=0.052 avg_d=0.030 std_dev=0.023
C8 A 0, 0.006, 0.035, 0.064, 0.067 max_d=0.067 avg_d=0.035 std_dev=0.029
O4' A 0, 0.008, 0.101, 0.194, 0.194 max_d=0.194 avg_d=0.101 std_dev=0.093
C5' A 0, 0.015, 0.128, 0.242, 0.253 max_d=0.253 avg_d=0.128 std_dev=0.114
C2' A 0, 0.005, 0.160, 0.314, 0.315 max_d=0.315 avg_d=0.160 std_dev=0.154
C4' A 0, 0.009, 0.239, 0.468, 0.470 max_d=0.470 avg_d=0.239 std_dev=0.230
O5' A 0, 0.019, 0.338, 0.657, 0.658 max_d=0.658 avg_d=0.338 std_dev=0.319
C2' B 0, 0.028, 0.434, 0.840, 0.845 max_d=0.845 avg_d=0.434 std_dev=0.406
P A 0, 0.030, 0.495, 0.961, 0.965 max_d=0.965 avg_d=0.495 std_dev=0.466
O2' B 0, 0.033, 0.552, 1.070, 1.101 max_d=1.101 avg_d=0.552 std_dev=0.519
O2' A 0, 0.018, 0.572, 1.126, 1.136 max_d=1.136 avg_d=0.572 std_dev=0.554
C3' A 0, 0.006, 0.656, 1.306, 1.325 max_d=1.325 avg_d=0.656 std_dev=0.650
OP2 A 0, 0.026, 0.845, 1.664, 1.691 max_d=1.691 avg_d=0.845 std_dev=0.819
C3' B 0, 0.031, 1.036, 2.040, 2.041 max_d=2.041 avg_d=1.036 std_dev=1.004
O3' A 0, 0.017, 1.416, 2.814, 2.830 max_d=2.830 avg_d=1.416 std_dev=1.399
C1' B 0, 0.025, 1.528, 3.030, 3.050 max_d=3.050 avg_d=1.528 std_dev=1.503
OP1 A 0, 0.034, 1.557, 3.080, 3.086 max_d=3.086 avg_d=1.557 std_dev=1.523
O3' B 0, 0.037, 1.768, 3.499, 3.529 max_d=3.529 avg_d=1.768 std_dev=1.731
C4' B 0, 0.023, 1.809, 3.595, 3.604 max_d=3.604 avg_d=1.809 std_dev=1.786
N1 B 0, 0.027, 1.851, 3.676, 3.701 max_d=3.701 avg_d=1.851 std_dev=1.824
O4' B 0, 0.020, 2.018, 4.016, 4.036 max_d=4.036 avg_d=2.018 std_dev=1.998
C6 B 0, 0.026, 2.080, 4.134, 4.159 max_d=4.159 avg_d=2.080 std_dev=2.054
C5 B 0, 0.024, 2.287, 4.551, 4.578 max_d=4.578 avg_d=2.287 std_dev=2.263
C2 B 0, 0.024, 2.362, 4.700, 4.715 max_d=4.715 avg_d=2.362 std_dev=2.338
C4 B 0, 0.022, 2.376, 4.729, 4.759 max_d=4.759 avg_d=2.376 std_dev=2.353
N3 B 0, 0.024, 2.613, 5.201, 5.221 max_d=5.221 avg_d=2.613 std_dev=2.589
N4 B 0, 0.027, 2.622, 5.217, 5.255 max_d=5.255 avg_d=2.622 std_dev=2.595
O2 B 0, 0.023, 2.828, 5.633, 5.633 max_d=5.633 avg_d=2.828 std_dev=2.805
C5' B 0, 0.022, 3.045, 6.068, 6.086 max_d=6.086 avg_d=3.045 std_dev=3.023
O5' B 0, 0.031, 3.143, 6.255, 6.295 max_d=6.295 avg_d=3.143 std_dev=3.112
P B 0, 0.037, 4.299, 8.560, 8.592 max_d=8.592 avg_d=4.299 std_dev=4.261
OP2 B 0, 0.046, 4.374, 8.702, 8.719 max_d=8.719 avg_d=4.374 std_dev=4.328
OP1 B 0, 0.040, 4.738, 9.436, 9.473 max_d=9.473 avg_d=4.738 std_dev=4.698

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.00 0.01 0.00 0.02 0.00 0.00 0.00 0.09 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.33 0.00 0.22 0.01 0.38 0.26 0.26
C2 0.01 0.00 0.09 0.10 0.00 0.01 0.00 0.08 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.24 0.33 0.04 0.22 0.01 0.86 0.11 0.36
C2' 0.00 0.09 0.00 0.00 0.05 0.01 0.02 0.22 0.04 0.03 0.07 0.11 0.09 0.01 0.01 0.00 0.03 0.02 0.39 0.02 0.41 0.22 0.38
C3' 0.02 0.10 0.00 0.00 0.16 0.01 0.24 0.04 0.24 0.29 0.18 0.04 0.07 0.31 0.17 0.01 0.01 0.00 0.16 0.27 0.43 0.26 0.23
C4 0.00 0.00 0.05 0.16 0.00 0.02 0.00 0.08 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.21 0.20 0.04 0.21 0.00 0.80 0.16 0.34
C4' 0.00 0.01 0.01 0.01 0.02 0.00 0.03 0.01 0.03 0.05 0.03 0.01 0.01 0.04 0.03 0.25 0.01 0.00 0.02 0.03 0.29 0.23 0.03
C5 0.00 0.00 0.02 0.24 0.00 0.03 0.00 0.08 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.24 0.06 0.04 0.17 0.01 0.96 0.13 0.36
C5' 0.09 0.08 0.22 0.04 0.08 0.01 0.08 0.00 0.08 0.06 0.08 0.08 0.09 0.06 0.08 0.02 0.29 0.00 0.01 0.08 0.33 0.35 0.01
C6 0.00 0.00 0.04 0.24 0.00 0.03 0.00 0.08 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.27 0.09 0.04 0.17 0.00 1.05 0.09 0.38
C8 0.01 0.01 0.03 0.29 0.01 0.05 0.01 0.06 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.15 0.08 0.03 0.13 0.02 0.78 0.21 0.32
N1 0.01 0.01 0.07 0.18 0.01 0.03 0.00 0.08 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.26 0.20 0.04 0.19 0.01 0.99 0.09 0.37
N2 0.01 0.00 0.11 0.04 0.01 0.01 0.00 0.08 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.22 0.42 0.04 0.23 0.01 0.83 0.11 0.35
N3 0.00 0.00 0.09 0.07 0.00 0.01 0.00 0.09 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.20 0.36 0.04 0.22 0.01 0.75 0.14 0.34
N7 0.01 0.00 0.01 0.31 0.00 0.04 0.00 0.06 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.09 0.03 0.12 0.01 0.97 0.15 0.35
N9 0.00 0.00 0.01 0.17 0.00 0.03 0.00 0.08 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.14 0.14 0.03 0.20 0.01 0.66 0.21 0.31
O2' 0.01 0.24 0.00 0.01 0.21 0.25 0.24 0.02 0.27 0.15 0.26 0.22 0.20 0.21 0.14 0.00 0.04 0.18 0.29 0.29 0.34 0.17 0.30
O3' 0.33 0.33 0.03 0.01 0.20 0.01 0.06 0.29 0.09 0.08 0.20 0.42 0.36 0.09 0.14 0.04 0.00 0.26 0.44 0.02 1.07 0.55 0.64
O4' 0.00 0.04 0.02 0.00 0.04 0.00 0.04 0.00 0.04 0.03 0.04 0.04 0.04 0.03 0.03 0.18 0.26 0.00 0.08 0.05 0.09 0.35 0.13
O5' 0.22 0.22 0.39 0.16 0.21 0.02 0.17 0.01 0.17 0.13 0.19 0.23 0.22 0.12 0.20 0.29 0.44 0.08 0.00 0.16 0.02 0.01 0.01
O6 0.01 0.01 0.02 0.27 0.00 0.03 0.01 0.08 0.00 0.02 0.01 0.01 0.01 0.01 0.01 0.29 0.02 0.05 0.16 0.00 1.14 0.07 0.38
OP1 0.38 0.86 0.41 0.43 0.80 0.29 0.96 0.33 1.05 0.78 0.99 0.83 0.75 0.97 0.66 0.34 1.07 0.09 0.02 1.14 0.00 0.02 0.01
OP2 0.26 0.11 0.22 0.26 0.16 0.23 0.13 0.35 0.09 0.21 0.09 0.11 0.14 0.15 0.21 0.17 0.55 0.35 0.01 0.07 0.02 0.00 0.00
P 0.26 0.36 0.38 0.23 0.34 0.03 0.36 0.01 0.38 0.32 0.37 0.35 0.34 0.35 0.31 0.30 0.64 0.13 0.01 0.38 0.01 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 1.18 1.85 0.33 0.47 1.63 0.23 1.20 0.67 1.07 1.40 1.91 1.69 2.08 0.23 1.31 0.84 0.58 1.98 0.87 1.06
C2 1.08 1.24 0.31 0.04 1.15 0.44 1.03 0.44 1.02 1.14 1.23 1.15 1.30 0.13 0.81 1.11 0.44 0.23 0.36 0.30
C2' 1.19 2.01 0.47 0.44 1.66 0.41 1.09 1.05 0.95 1.42 2.07 1.73 2.37 0.42 1.17 0.64 0.93 2.44 1.31 1.55
C3' 0.94 1.76 0.24 0.73 1.34 0.67 0.72 1.39 0.60 1.13 1.82 1.41 2.19 0.28 1.44 0.39 1.38 3.05 1.95 2.12
C4 1.15 1.55 0.34 0.23 1.38 0.13 1.12 0.06 1.06 1.28 1.56 1.40 1.71 0.20 1.04 0.98 0.01 0.99 0.17 0.29
C4' 1.15 1.96 0.34 0.57 1.71 0.39 1.16 0.97 0.99 1.40 2.08 1.81 2.28 0.28 1.38 0.70 0.92 2.53 1.38 1.55
C5 1.08 1.43 0.33 0.13 1.30 0.25 1.08 0.15 1.02 1.20 1.45 1.32 1.57 0.19 0.87 0.97 0.18 0.65 0.04 0.04
C5' 1.01 1.85 0.24 0.63 1.61 0.49 1.05 1.04 0.87 1.27 1.97 1.73 2.17 0.17 1.42 0.56 0.97 2.51 1.42 1.59
C6 1.00 1.22 0.31 0.02 1.14 0.45 1.01 0.48 0.98 1.08 1.24 1.16 1.30 0.16 0.65 0.99 0.48 0.12 0.39 0.35
C8 1.13 1.66 0.34 0.30 1.48 0.00 1.13 0.27 1.03 1.30 1.71 1.53 1.88 0.23 1.09 0.88 0.21 1.33 0.45 0.57
N1 0.98 1.12 0.30 0.07 1.07 0.55 0.98 0.64 0.97 1.04 1.12 1.07 1.16 0.12 0.59 1.04 0.61 0.10 0.55 0.52
N2 1.04 1.06 0.29 0.06 1.02 0.64 0.98 0.71 0.99 1.05 1.05 1.00 1.06 0.07 0.70 1.19 0.66 0.11 0.59 0.56
N3 1.17 1.49 0.33 0.23 1.33 0.17 1.11 0.01 1.07 1.28 1.49 1.34 1.62 0.17 1.06 1.06 0.07 0.86 0.06 0.18
N7 1.09 1.52 0.34 0.19 1.37 0.16 1.10 0.01 1.02 1.23 1.56 1.41 1.70 0.22 0.93 0.92 0.04 0.90 0.15 0.24
N9 1.16 1.70 0.33 0.35 1.50 0.05 1.15 0.36 1.06 1.34 1.74 1.55 1.91 0.22 1.17 0.90 0.28 1.46 0.51 0.66
O2' 0.87 1.85 0.16 0.77 1.59 0.84 0.97 1.51 0.75 1.20 1.98 1.69 2.17 0.05 1.47 0.25 1.29 2.78 1.54 1.88
O3' 0.51 1.42 0.19 1.27 0.97 1.20 0.27 2.00 0.12 0.70 1.50 1.07 1.90 0.10 1.97 0.09 2.05 3.87 2.69 2.86
O4' 1.19 1.89 0.30 0.50 1.72 0.21 1.28 0.64 1.13 1.43 1.99 1.81 2.12 0.20 1.37 0.87 0.56 2.03 0.90 1.06
O5' 0.79 1.59 0.08 0.75 1.31 0.65 0.76 1.19 0.60 1.02 1.69 1.42 1.94 0.03 1.48 0.31 1.11 2.53 1.52 1.69
O6 0.94 1.12 0.31 0.10 1.07 0.53 0.97 0.63 0.94 1.01 1.14 1.09 1.18 0.15 0.49 0.96 0.61 0.14 0.54 0.53
OP1 0.35 1.34 0.29 1.10 1.16 1.12 0.54 1.62 0.29 0.68 1.53 1.35 1.68 0.42 1.80 0.22 1.44 2.76 1.73 1.97
OP2 1.01 1.75 0.32 0.49 1.43 0.36 0.88 0.86 0.76 1.19 1.82 1.51 2.13 0.31 1.21 0.55 0.84 2.21 1.31 1.42
P 0.70 1.54 0.02 0.79 1.28 0.72 0.71 1.23 0.53 0.94 1.66 1.40 1.89 0.04 1.50 0.20 1.14 2.51 1.54 1.71

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.01 0.01 0.02 0.00 0.02 0.05 0.01 0.02 0.02 0.03 0.01 0.03 0.01 0.00 0.03 0.08 0.06 0.02
C2 0.02 0.00 0.09 0.02 0.00 0.05 0.00 0.18 0.01 0.00 0.00 0.01 0.00 0.15 0.03 0.00 0.22 0.26 0.17 0.20
C2' 0.01 0.09 0.00 0.00 0.10 0.01 0.06 0.02 0.03 0.05 0.11 0.11 0.09 0.00 0.02 0.03 0.01 0.12 0.09 0.01
C3' 0.01 0.02 0.00 0.00 0.05 0.00 0.08 0.00 0.09 0.05 0.02 0.04 0.00 0.01 0.00 0.02 0.02 0.14 0.08 0.02
C4 0.02 0.00 0.10 0.05 0.00 0.12 0.00 0.31 0.01 0.01 0.00 0.01 0.01 0.11 0.01 0.01 0.36 0.40 0.34 0.35
C4' 0.00 0.05 0.01 0.00 0.12 0.00 0.15 0.01 0.15 0.07 0.07 0.12 0.00 0.06 0.03 0.00 0.04 0.06 0.07 0.02
C5 0.02 0.00 0.06 0.08 0.00 0.15 0.00 0.35 0.00 0.00 0.00 0.01 0.01 0.04 0.07 0.01 0.38 0.40 0.31 0.35
C5' 0.05 0.18 0.02 0.00 0.31 0.01 0.35 0.00 0.31 0.19 0.25 0.33 0.11 0.04 0.01 0.01 0.01 0.02 0.01 0.03
C6 0.01 0.01 0.03 0.09 0.01 0.15 0.00 0.31 0.00 0.00 0.01 0.01 0.01 0.02 0.09 0.02 0.30 0.30 0.15 0.23
N1 0.02 0.00 0.05 0.05 0.01 0.07 0.00 0.19 0.00 0.00 0.00 0.01 0.01 0.05 0.03 0.01 0.19 0.22 0.09 0.15
N3 0.02 0.00 0.11 0.02 0.00 0.07 0.00 0.25 0.01 0.00 0.00 0.00 0.00 0.16 0.03 0.01 0.30 0.34 0.27 0.29
N4 0.03 0.01 0.11 0.04 0.01 0.12 0.01 0.33 0.01 0.01 0.00 0.00 0.01 0.13 0.01 0.02 0.38 0.45 0.42 0.40
O2 0.01 0.00 0.09 0.00 0.01 0.00 0.01 0.11 0.01 0.01 0.00 0.01 0.00 0.20 0.07 0.00 0.16 0.21 0.13 0.15
O2' 0.03 0.15 0.00 0.01 0.11 0.06 0.04 0.04 0.02 0.05 0.16 0.13 0.20 0.00 0.03 0.15 0.02 0.14 0.06 0.04
O3' 0.01 0.03 0.02 0.00 0.01 0.03 0.07 0.01 0.09 0.03 0.03 0.01 0.07 0.03 0.00 0.03 0.02 0.20 0.06 0.06
O4' 0.00 0.00 0.03 0.02 0.01 0.00 0.01 0.01 0.02 0.01 0.01 0.02 0.00 0.15 0.03 0.00 0.12 0.05 0.18 0.13
O5' 0.03 0.22 0.01 0.02 0.36 0.04 0.38 0.01 0.30 0.19 0.30 0.38 0.16 0.02 0.02 0.12 0.00 0.02 0.03 0.01
OP1 0.08 0.26 0.12 0.14 0.40 0.06 0.40 0.02 0.30 0.22 0.34 0.45 0.21 0.14 0.20 0.05 0.02 0.00 0.01 0.00
OP2 0.06 0.17 0.09 0.08 0.34 0.07 0.31 0.01 0.15 0.09 0.27 0.42 0.13 0.06 0.06 0.18 0.03 0.01 0.00 0.00
P 0.02 0.20 0.01 0.02 0.35 0.02 0.35 0.03 0.23 0.15 0.29 0.40 0.15 0.04 0.06 0.13 0.01 0.00 0.00 0.00