sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A756-A754
X
>3F1H-A768-A766
X
>3CC7-01288-0894
X
>3CMA-01288-0894
X
>3CCL-01288-0894
X
>3G6E-01288-0894
X
</seq>
<hsp>
0 1:0.386879864205
0 2:0.61215984029
0 3:0.654246120845
0 4:0.634161956321
0 5:0.611715378285
1 2:0.954861547412
1 3:0.999998894781
1 4:0.980084846677
1 5:0.954977208215
2 3:0.0537655475197
2 4:0.0426273517285
2 5:0.0402542402401
3 4:0.0350606773371
3 5:0.0585328260634
4 5:0.0344885072033
</hsp>