sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-51668-51681
X
>1N32-A1094-A1156
X
>3OGY-A1319-A1325
X
>3KNI-A2359-A1946
X
>3U5D-12725-12088
X
>3U5H-52726-52092
X
</seq>
<hsp>
0 1:0.899133817229
0 2:0.96348207644
0 3:0.999997608267
0 4:0.99338874651
0 5:0.995587495201
1 2:0.87406472462
1 3:0.374091609543
1 4:0.378766693357
1 5:0.350991302023
2 3:0.732359467082
2 4:0.749718057551
2 5:0.769661427007
3 4:0.0654588290147
3 5:0.0861679359801
4 5:0.0449046115577
</hsp>