sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OI0-A1299-A1337
X
>3OHY-A1299-A1337
X
>3OGY-A1299-A1337
X
>3OHC-A1299-A1337
X
>3U5B-2425-2458
X
>3RW6-F50-F13
X
>3RW6-H50-H13
X
>2UXC-A344-A378
X
>3OGY-A344-A378
X
>2VQE-A344-A378
X
>3U5F-6422-6455
X
>2VQF-A344-A378
X
</seq>
<hsp>
0 1:0.0042412670296
0 2:0.0354425499821
0 3:0.0366623081572
0 4:0.974613057797
0 5:0.949132255842
0 6:0.965398150925
0 7:0.959476372982
0 8:0.989360078964
0 9:0.957825781485
0 10:0.980805693366
0 11:0.966464029952
1 2:0.0336501612803
1 3:0.0356812194095
1 4:0.975003265008
1 5:0.951321511828
1 6:0.967244369511
1 7:0.95964255936
1 8:0.990889607738
1 9:0.957878071202
1 10:0.981451054926
1 11:0.966628664354
2 3:0.0394393448952
2 4:0.964003915656
2 5:0.971939995691
2 6:0.986409069153
2 7:0.946406106426
2 8:0.988018686093
2 9:0.944480998015
2 10:0.972233163905
2 11:0.95460209751
3 4:0.982534701248
3 5:0.959200451301
3 6:0.976344018172
3 7:0.966286519614
3 8:0.999999170758
3 9:0.964529826898
3 10:0.989509356316
3 11:0.974154585572
4 5:0.181852003867
4 6:0.256713526632
4 7:0.0459419694034
4 8:0.0522555352252
4 9:0.0402246615343
4 10:0.0268420081659
4 11:0.0342748169408
5 6:0.0962677789729
5 7:0.197721929869
5 8:0.162779332661
5 9:0.187605269681
5 10:0.180048950026
5 11:0.177085743043
6 7:0.277755815814
6 8:0.242395271456
6 9:0.263917779877
6 10:0.258473732367
6 11:0.248227462275
7 8:0.0675133959871
7 9:0.0285637225747
7 10:0.0407402059266
7 11:0.0463737196774
8 9:0.0664012849832
8 10:0.0402307656915
8 11:0.0560528998582
9 10:0.0411101472216
9 11:0.0311006362747
10 11:0.0373084107488
</hsp>