sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X570-X560
X
>1N32-A484-A6
X
>2J02-A484-A6
X
>3OGE-A484-A6
X
>3OGY-A484-A6
X
>2J00-A484-A6
X
>1FJG-A484-A6
X
>3KNH-A335-A369
X
>3F1E-A484-A6
X
>3G78-A357-A133
X
</seq>
<hsp>
0 1:0.921094971873
0 2:0.93338487094
0 3:0.946834055782
0 4:0.943907823828
0 5:0.933342818789
0 6:0.908790055609
0 7:0.846480633992
0 8:0.958293691001
0 9:0.999998796401
1 2:0.037273297418
1 3:0.0717842811584
1 4:0.0739673659202
1 5:0.0358033670464
1 6:0.0463791911288
1 7:0.704098342486
1 8:0.0536058005644
1 9:0.271350827447
2 3:0.0778602981209
2 4:0.0787198069195
2 5:0.00621522312173
2 6:0.0782925743652
2 7:0.69379119413
2 8:0.0462697717875
2 9:0.248818621451
3 4:0.00814558284758
3 5:0.0800533288803
3 6:0.0809029605951
3 7:0.744983834155
3 8:0.066304365
3 9:0.313724823673
4 5:0.0809525365366
4 6:0.083045862584
4 7:0.742862279957
4 8:0.0691164127349
4 9:0.313352998745
5 6:0.0761068208362
5 7:0.691812676382
5 8:0.0460838226231
5 9:0.247014194753
6 7:0.710293361478
6 8:0.0812923329472
6 9:0.303975200018
7 8:0.717166032953
7 9:0.608735465678
8 9:0.258416309945
</hsp>