sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHD-A368-A56
X
>3OHC-A368-A56
X
>3OHC-A478-A526
X
>3OHD-A478-A526
X
>3OI0-A484-A6
X
>3G6E-02480-01925
X
>3CCU-02480-01925
X
>3CC7-02480-01925
X
>1YJN-02480-01925
X
</seq>
<hsp>
0 1:0.00669623556411
0 2:0.219419959742
0 3:0.216066913639
0 4:0.890147637708
0 5:0.730826421592
0 6:0.748432823915
0 7:0.734405138252
0 8:0.73457343164
1 2:0.214865489025
1 3:0.211547653245
1 4:0.891685839786
1 5:0.731841158442
1 6:0.749370103752
1 7:0.735428284952
1 8:0.735644988945
2 3:0.00615344077557
2 4:0.999225835598
2 5:0.790516698727
2 6:0.804283813152
2 7:0.798985163834
2 8:0.797114422784
3 4:1.0
3 5:0.791516473323
3 6:0.805357344121
3 7:0.799937303883
3 8:0.798065070283
4 5:0.623289443723
4 6:0.630141503129
4 7:0.599197988839
4 8:0.62544345215
5 6:0.0276929689051
5 7:0.0303464529655
5 8:0.0327561699065
6 7:0.0416371414523
6 8:0.0358364945
7 8:0.0378748982906
</hsp>