sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X1102-X887
X
>3OWI-A9-A31
X
>3OXM-A9-A31
X
>3OWZ-B9-B26
X
>3OWW-A9-A31
X
>3OWI-B9-B31
X
>3OWW-B9-B30
X
>3OWZ-A9-A31
X
</seq>
<hsp>
0 1:0.993448668923
0 2:0.999999511143
0 3:0.99347171034
0 4:0.997819569251
0 5:0.993784002309
0 6:0.996942480857
0 7:0.994639092665
1 2:0.0258860841274
1 3:0.0395166436804
1 4:0.0163995233646
1 5:0.0342366428964
1 6:0.0326510646419
1 7:0.0334571529662
2 3:0.0272197296686
2 4:0.0179591186236
2 5:0.0265702958863
2 6:0.0276641801125
2 7:0.025790328084
3 4:0.0304488519579
3 5:0.0344511104386
3 6:0.037015019544
3 7:0.0258186442346
4 5:0.025045604008
4 6:0.022241888234
4 7:0.021897272478
5 6:0.00842505557394
5 7:0.0158500506269
6 7:0.0156258501298
</hsp>