sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A958-A1209
X
>3R8S-A933-A1184
X
>2J01-A940-A1139
X
>3R8T-A933-A1184
X
>3OH7-A940-A1139
X
>3OHZ-A940-A1139
X
>3OHJ-A940-A1139
X
</seq>
<hsp>
0 1:0.473820727138
0 2:0.599922095999
0 3:0.960631048583
0 4:0.999987380379
0 5:0.774021437027
0 6:0.677478431226
1 2:0.365666579659
1 3:0.90051082537
1 4:0.882817157513
1 5:0.618277404187
1 6:0.546117363789
2 3:0.758929006261
2 4:0.906327323543
2 5:0.558142588143
2 6:0.530200832725
3 4:0.649804625134
3 5:0.466395807208
3 6:0.567165206293
4 5:0.502436393147
4 6:0.510092756807
5 6:0.178885544211
</hsp>