sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OXB-B62-B37
X
>3KNI-A2631-A2586
X
>3KNK-A2631-A2586
X
>3F1H-A2710-A2665
X
>3F1F-A2710-A2665
X
>2J01-A2603-A2558
X
</seq>
<hsp>
0 1:0.979568504682
0 2:0.593570229256
0 3:0.649983367172
0 4:0.648415868082
0 5:0.545333985839
1 2:0.999999949182
1 3:0.684004459733
1 4:0.672288588234
1 5:0.813784824033
2 3:0.582711124059
2 4:0.572883024853
2 5:0.439474447949
3 4:0.0298242309683
3 5:0.308622777477
4 5:0.311143900977
</hsp>