sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A1016-A1009
X
>1VQP-02753-02662
X
>1VQO-02753-02662
X
>2J00-A55-A95
X
>3OH5-A253-A282
X
>2OTJ-92-920
X
>1VQP-92-920
X
>2QA4-92-920
X
>1VQ8-92-920
X
>1VQM-92-920
X
>1YI2-92-920
X
</seq>
<hsp>
0 1:0.41651164996
0 2:0.381371611635
0 3:0.761277300938
0 4:0.615679808365
0 5:0.999997808498
0 6:0.908711904614
0 7:0.916274965163
0 8:0.921442702456
0 9:0.939990469793
0 10:0.900038281062
1 2:0.160101638863
1 3:0.598173714815
1 4:0.481066810882
1 5:0.816694859748
1 6:0.713967509507
1 7:0.668640886187
1 8:0.726882041353
1 9:0.748735118459
1 10:0.685776044281
2 3:0.525513951502
2 4:0.35951378551
2 5:0.723585144981
2 6:0.623849642073
2 7:0.602578715688
2 8:0.637267477547
2 9:0.656921310868
2 10:0.606178263815
3 4:0.284330030301
3 5:0.354969368506
3 6:0.273229762898
3 7:0.307588826614
3 8:0.277543939952
3 9:0.304117880685
3 10:0.252350614457
4 5:0.428786488504
4 6:0.339141504397
4 7:0.40570651963
4 8:0.362137081507
4 9:0.382173045786
4 10:0.370231025481
5 6:0.110871844957
5 7:0.267220028528
5 8:0.106963726781
5 9:0.0955461708143
5 10:0.217557049154
6 7:0.19764149014
6 8:0.0506126570517
6 9:0.0838107344583
6 10:0.152243975383
7 8:0.181412226647
7 9:0.208101808154
7 10:0.106486246833
8 9:0.0451631373858
8 10:0.120787917304
9 10:0.14086690037
</hsp>