sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1N8R-A1817-A1836
X
>1VQ9-01817-01836
X
>1YI2-01817-01836
X
>1YIJ-01817-01836
X
>3OH5-A827-A942
X
>2QBZ-X56-X7
X
>3R8N-A150-A66
X
>2J02-A1491-A1469
X
>3OHY-A1491-A1469
X
>3OI1-A172-A807
X
</seq>
<hsp>
0 1:0.0848745278329
0 2:0.122664700956
0 3:0.131269674817
0 4:0.999999937306
0 5:0.561906949014
0 6:0.546073936447
0 7:0.569882737976
0 8:0.585360660607
0 9:0.700668883878
1 2:0.0736101976315
1 3:0.0845605704341
1 4:0.963315495341
1 5:0.522890629247
1 6:0.524901931983
1 7:0.538194748423
1 8:0.553029412827
1 9:0.66801271567
2 3:0.0294776543481
2 4:0.920487867283
2 5:0.485775535278
2 6:0.484239331468
2 7:0.492239993534
2 8:0.505349201882
2 9:0.615764003101
3 4:0.902747863255
3 5:0.466396872401
3 6:0.461145799939
3 7:0.472674865451
3 8:0.486980250433
3 9:0.598583826306
4 5:0.456462626975
4 6:0.53474899178
4 7:0.458838356324
4 8:0.453421290896
4 9:0.35823024422
5 6:0.183690643102
5 7:0.103562676545
5 8:0.133727799843
5 9:0.218288482152
6 7:0.129953463532
6 8:0.151191586782
6 9:0.251071935652
7 8:0.079237517737
7 9:0.163169206469
8 9:0.151268374982
</hsp>