sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3I56-088-071
X
>2ZJR-X2061-X867
X
>3CCR-0991-0927
X
>1YJW-088-071
X
>2UXC-A682-A666
X
>1VQP-088-071
X
>1S72-088-071
X
>1VQ8-088-071
X
>1YIT-088-071
X
>3CCL-088-071
X
</seq>
<hsp>
0 1:0.862398232347
0 2:0.497787508936
0 3:0.293691571781
0 4:0.440324254104
0 5:0.182430858676
0 6:0.225072444312
0 7:0.299612423765
0 8:0.378236131609
0 9:0.446632720535
1 2:0.944255851926
1 3:0.872282917165
1 4:1.0
1 5:0.762211470204
1 6:0.817186342397
1 7:0.667747454114
1 8:0.709861426328
1 9:0.681905857317
2 3:0.354269835757
2 4:0.58265226093
2 5:0.527935892879
2 6:0.385493125921
2 7:0.545222827775
2 8:0.402673544956
2 9:0.409256319893
3 4:0.355219689948
3 5:0.272880529756
3 6:0.156264844321
3 7:0.315045707912
3 8:0.216066166898
3 9:0.356965476833
4 5:0.389232112001
4 6:0.406058191615
4 7:0.394193149968
4 8:0.395595352271
4 9:0.475102989156
5 6:0.193684163815
5 7:0.134170044264
5 8:0.263023023357
5 9:0.338470422696
6 7:0.253399285624
6 8:0.216965713574
6 9:0.306200783864
7 8:0.207889031487
7 9:0.265488617606
8 9:0.185582968085
</hsp>