sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A1320-A1644
X
>2J01-A1250-A1566
X
>3OHK-A1728-A1747
X
>2ZJR-X1696-X1716
X
>3R8S-A442-A1238
X
>3OI1-A1728-A1747
X
>3OI1-A457-A1194
X
>3U5H-51154-52587
X
>3D2V-B43-B8
X
</seq>
<hsp>
0 1:0.376765067213
0 2:0.91042143732
0 3:0.743431111264
0 4:0.987196092051
0 5:0.929238776497
0 6:0.886562473667
0 7:0.947530999742
0 8:0.961164105792
1 2:0.999988419001
1 3:0.751630929996
1 4:0.845343345799
1 5:0.972949937803
1 6:0.777548086436
1 7:0.865980724245
1 8:0.895115652785
2 3:0.454881846088
2 4:0.630023078228
2 5:0.323829951139
2 6:0.7955062573
2 7:0.782690188071
2 8:0.658965773597
3 4:0.454640118772
3 5:0.557105305076
3 6:0.521007164157
3 7:0.531452269776
3 8:0.448170240859
4 5:0.652960682279
4 6:0.553130181069
4 7:0.581016824108
4 8:0.534557124488
5 6:0.677302441436
5 7:0.668632459797
5 8:0.551674720882
6 7:0.191633246883
6 8:0.28942599766
7 8:0.314359521482
</hsp>