sequences=17
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1Q81-A1119-A1165
X
>3R8T-A2656-A2648
X
>1Q86-A1119-A1165
X
>2UXC-A1350-A1324
X
>3I56-01119-01165
X
>3OI1-A483-A473
X
>3OHZ-A483-A473
X
>3KNI-A923-A868
X
>3OHK-A826-A1136
X
>3OHJ-A826-A1136
X
>1VQM-01119-01165
X
>1VQ8-01119-01165
X
>1YJ9-01119-01165
X
>3CC4-01119-01165
X
>1VQP-01119-01165
X
>1VQK-01119-01165
X
>1VQO-01119-01165
X
</seq>
<hsp>
0 1:0.672969496907
0 2:0.0432088208333
0 3:0.691214372103
0 4:0.460281635284
0 5:1.0
0 6:0.988142572061
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15 16:0.0854080256614
</hsp>