sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-02348-02353
X
>3CD6-02348-02353
X
>3U5H-52969-53012
X
>1VQ5-02348-02353
X
>3CCS-02348-02353
X
>3CCE-02348-02353
X
>3CCJ-02621-02630
X
>3OH7-A2578-A2587
X
>3OHZ-A2578-A2587
X
>3OI1-A2578-A2587
X
</seq>
<hsp>
0 1:0.0585514189822
0 2:0.948213087055
0 3:0.0972849521892
0 4:0.0764689222389
0 5:0.0913148320164
0 6:0.81857179087
0 7:0.845223827493
0 8:0.83411405497
0 9:0.83737808993
1 2:0.982403717551
1 3:0.0505137963319
1 4:0.0459214154438
1 5:0.0885854573012
1 6:0.847363022274
1 7:0.874515596025
1 8:0.863141307734
1 9:0.866565154533
2 3:0.99999806941
2 4:0.969559430042
2 5:0.931716623031
2 6:0.382213873715
2 7:0.377783190738
2 8:0.382393925676
2 9:0.383293958775
3 4:0.0501934914636
3 5:0.0898454116622
3 6:0.875164807929
3 7:0.90177070415
3 8:0.890699417257
3 9:0.894119360536
4 5:0.0582625590946
4 6:0.839492031507
4 7:0.86548294041
4 8:0.85407243597
4 9:0.857554004461
5 6:0.812456844933
5 7:0.837415479863
5 8:0.826019721019
5 9:0.829563732548
6 7:0.0419738030529
6 8:0.0418991931039
6 9:0.0413652729413
7 8:0.0190855982103
7 9:0.015089463565
8 9:0.00678438168311
</hsp>