sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A804-A827
X
>1M90-A2484-A2462
X
>1Q81-A2484-A2462
X
>3CXC-02484-02462
X
>1NJI-A2484-A2462
X
>1K8A-A2484-A2462
X
>1N8R-A2484-A2462
X
>1Q82-A2484-A2462
X
>1FFK-02437-02415
X
>3KNK-A812-A835
X
</seq>
<hsp>
0 1:0.931915259642
0 2:0.920056104124
0 3:0.938929146989
0 4:0.933285408395
0 5:0.935682875714
0 6:0.94968167711
0 7:0.944478806808
0 8:0.917959486453
0 9:0.348080686876
1 2:0.0310530445912
1 3:0.0128238018471
1 4:0.0164460881059
1 5:0.0168313678933
1 6:0.0301248302862
1 7:0.0237030740242
1 8:0.0225302147496
1 9:0.983068539064
2 3:0.0323287342297
2 4:0.0413272828038
2 5:0.0392790124601
2 6:0.0511019645495
2 7:0.0455542368081
2 8:0.0255310177772
2 9:0.971319446061
3 4:0.0213293385389
3 5:0.0165782192013
3 6:0.0309140372123
3 7:0.0252077729274
3 8:0.0307584056711
3 9:0.989144947579
4 5:0.0211784435399
4 6:0.0315415937637
4 7:0.0287153439998
4 8:0.0273588631182
4 9:0.983935006999
5 6:0.0373699298065
5 7:0.0288690601244
5 8:0.0302268553607
5 9:0.987629767631
6 7:0.0154130421501
6 8:0.0434688029417
6 9:0.999999353157
7 8:0.0387598540106
7 9:0.994933943978
8 9:0.970696536929
</hsp>