sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1XMQ-A554-A737
X
>3OHC-A554-A737
X
>2VQE-A554-A737
X
>3OHD-A554-A737
X
>1QVG-01723-01736
X
>1K9M-A1723-A1736
X
>1VQP-01723-01736
X
>1VQM-01723-01736
X
>3CC2-01723-01736
X
>1NJI-A1723-A1736
X
>1VQ9-01723-01736
X
>3G71-01723-01736
X
</seq>
<hsp>
0 1:0.0684221070661
0 2:0.044862394438
0 3:0.0678687402443
0 4:0.999999725754
0 5:0.986980249771
0 6:0.980860978361
0 7:0.981666767722
0 8:0.999345815966
0 9:0.990663812713
0 10:0.971967191097
0 11:0.99278387239
1 2:0.049390526305
1 3:0.0110672776067
1 4:0.99597614138
1 5:0.983366191764
1 6:0.977679140033
1 7:0.978096998464
1 8:0.995956400458
1 9:0.987580600842
1 10:0.968012730037
1 11:0.988654579904
2 3:0.0435071620157
2 4:0.972354006657
2 5:0.959492124443
2 6:0.954069015779
2 7:0.954538001379
2 8:0.972077565356
2 9:0.963720450568
2 10:0.944643357038
2 11:0.965267427902
3 4:0.989631138502
3 5:0.976858637425
3 6:0.971269793509
3 7:0.971660360483
3 8:0.989297708277
3 9:0.980992867452
3 10:0.961674368602
3 11:0.982122338586
4 5:0.0320753146982
4 6:0.0575017919802
4 7:0.0562824231997
4 8:0.0563928228047
4 9:0.0571916086646
4 10:0.0482166841845
4 11:0.0450044714768
5 6:0.0515676313277
5 7:0.0542412254775
5 8:0.033748458191
5 9:0.0322613734149
5 10:0.0451073149052
5 11:0.0338913390857
6 7:0.0177787459788
6 8:0.0573184712008
6 9:0.0477313328062
6 10:0.0254375273705
6 11:0.0354799300206
7 8:0.0603533078579
7 9:0.053898659015
7 10:0.0291239457639
7 11:0.0358100149363
8 9:0.0201571622496
8 10:0.0629078711145
8 11:0.0324178362105
9 10:0.0542293354795
9 11:0.0326003182878
10 11:0.038051705713
</hsp>