sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3SD3-A35-A78
X
>3F1G-A378-A359
X
>3F1E-A378-A359
X
>3OGY-A378-A359
X
>3OHD-A378-A359
X
>3OHC-A378-A359
X
>3OHY-A378-A359
X
>2J02-A378-A359
X
</seq>
<hsp>
0 1:0.984684547668
0 2:0.983469367212
0 3:0.999997235603
0 4:0.943656099452
0 5:0.946962405902
0 6:0.991152589765
0 7:0.957442390514
1 2:0.00620096476452
1 3:0.132234260025
1 4:0.0956234660136
1 5:0.0978299393633
1 6:0.141764176945
1 7:0.176021921327
2 3:0.134373020845
2 4:0.0969320557033
2 5:0.0993993400455
2 6:0.144140242065
2 7:0.17751754687
3 4:0.087894035026
3 5:0.0897988104497
3 6:0.0977217125584
3 7:0.0829571222975
4 5:0.0101586054757
4 6:0.109380653783
4 7:0.0992491448812
5 6:0.107425015734
5 7:0.0985330449435
6 7:0.0880389613881
</hsp>