sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1HC8-C5-C51
X
>1HC8-D5-D51
X
>1QA6-D5-D51
X
>1QA6-C5-C51
X
>1Y39-D5-D51
X
>1FFK-01290-02538
X
</seq>
<hsp>
0 1:0.0472992483313
0 2:0.062447312358
0 3:0.0625192982377
0 4:0.0605350886181
0 5:0.977465980314
1 2:0.0884937847805
1 3:0.0885471571517
1 4:0.0770476777015
1 5:0.999998404904
2 3:0.00017724512255
2 4:0.0426116895579
2 5:0.946478029059
3 4:0.0426864027002
3 5:0.946478879808
4 5:0.952574885631
</hsp>