sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A2725-A1593
X
>3KNK-A116-A109
X
>3KNI-A116-A109
X
>3R8S-A123-A116
X
>2ZJR-X121-X114
X
>3F1H-A116-A109
X
>3F1F-A116-A109
X
>2J03-A116-A109
X
>2J01-A116-A109
X
</seq>
<hsp>
0 1:0.875655029937
0 2:0.874696082513
0 3:0.945763976368
0 4:0.899423567698
0 5:1.0
0 6:0.999054408712
0 7:0.887686313017
0 8:0.884244226391
1 2:0.170427921557
1 3:0.303253508193
1 4:0.255112664466
1 5:0.247600371776
1 6:0.247225463269
1 7:0.19875922125
1 8:0.203493816082
2 3:0.23560572221
2 4:0.143601995921
2 5:0.179750641851
2 6:0.179586215626
2 7:0.0990011574824
2 8:0.106132972593
3 4:0.166958834303
3 5:0.132841183128
3 6:0.133842847103
3 7:0.174630391173
3 8:0.164417182732
4 5:0.133879626336
4 6:0.131617100376
4 7:0.0638108293341
4 8:0.0634871264599
5 6:0.0143829508251
5 7:0.127849841735
5 8:0.127351266701
6 7:0.12478873924
6 8:0.124225949125
7 8:0.016236801156
</hsp>