sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A944-A840
X
>2J03-A944-A840
X
>3KNK-A949-A839
X
>3OH7-A944-A840
X
>3OH5-A944-A840
X
>3OHZ-A1608-A1908
X
>3OI1-A1608-A1908
X
>1XMQ-A448-A451
X
>1N32-A448-A451
X
</seq>
<hsp>
0 1:0.00681425878099
0 2:0.121917747452
0 3:0.120295168431
0 4:0.113544895427
0 5:0.802159429542
0 6:0.796076843662
0 7:0.520417891963
0 8:0.525638431216
1 2:0.120007637414
1 3:0.120177889993
1 4:0.113654038422
1 5:0.801179877827
1 6:0.795079043459
1 7:0.520825900375
1 8:0.525996591059
2 3:0.0856272082629
2 4:0.0892935053777
2 5:0.753184826067
2 6:0.746807026713
2 7:0.516701530592
2 8:0.528649044373
3 4:0.0133706937461
3 5:0.793775997738
3 6:0.787388926939
3 7:0.5011947944
3 8:0.513521285276
4 5:0.795155338435
4 6:0.788778671411
4 7:0.498418382792
4 8:0.510301050464
5 6:0.0103407975368
5 7:0.977679069221
5 8:1.0
6 7:0.972816697502
6 8:0.99516405618
7 8:0.0483404020675
</hsp>