sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-5858-52225
X
>3F1F-A796-A2066
X
>3U5D-1852-12221
X
>3F1H-A796-A2066
X
>2J01-A784-A1988
X
>2J03-A784-A1988
X
>3B4C-B16-A0
X
>1Q86-A2269-A2303
X
</seq>
<hsp>
0 1:0.149599743334
0 2:0.0469917072921
0 3:0.14600350844
0 4:0.11608355317
0 5:0.112654664709
0 6:0.500337044979
0 7:0.965580952684
1 2:0.121661442729
1 3:0.00924252362786
1 4:0.0742206640184
1 5:0.0779395421395
1 6:0.51503193315
1 7:1.0
2 3:0.117114078844
2 4:0.099674721077
2 5:0.0986679486473
2 6:0.490677076924
2 7:0.968069009779
3 4:0.0748009942248
3 5:0.0785287854361
3 6:0.513163408215
3 7:0.995884649584
4 5:0.0116765702695
4 6:0.497101162031
4 7:0.990919717302
5 6:0.496512330432
5 7:0.986078738404
6 7:0.740227449292
</hsp>