sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X518-X604
X
>3G8T-S49-H9
X
>3OH5-A597-A678
X
>3OH7-A597-A678
X
>3F1F-A606-A690
X
>3L3C-S49-H9
X
>3F1H-A606-A690
X
>2NZ4-S49-H9
X
>3KNI-A597-A678
X
>2NZ4-P49-E9
X
</seq>
<hsp>
0 1:0.942862428384
0 2:0.622567567944
0 3:0.5853679043
0 4:0.718921114698
0 5:0.781333344807
0 6:0.72025380949
0 7:0.964943474725
0 8:0.999996907787
0 9:0.979061490586
1 2:0.569030763502
1 3:0.56888881788
1 4:0.609470050993
1 5:0.382146062742
1 6:0.580284839673
1 7:0.539771341659
1 8:0.738303744766
1 9:0.561352996585
2 3:0.0986842932877
2 4:0.200105407868
2 5:0.424208479978
2 6:0.210954346993
2 7:0.584872983162
2 8:0.487704057888
2 9:0.474234242844
3 4:0.212214191579
3 5:0.425365912907
3 6:0.22005725422
3 7:0.564229915962
3 8:0.502473097951
3 9:0.468208445315
4 5:0.430901807848
4 6:0.0486668132475
4 7:0.468908216251
4 8:0.331183688462
4 9:0.338941418449
5 6:0.405801172388
5 7:0.455722813422
5 8:0.644059923292
5 9:0.48541065446
6 7:0.433547394796
6 8:0.329319456172
6 9:0.319477469675
7 8:0.446629945356
7 9:0.252988322286
8 9:0.249581303526
</hsp>