sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2VQE-A378-A359
X
>2UUA-A378-A359
X
>2UXC-A378-A359
X
>3OI0-A378-A359
X
>1XMQ-A378-A359
X
>2J00-A378-A359
X
>2VQF-A378-A359
X
>2UUB-A378-A359
X
>1N32-A378-A359
X
</seq>
<hsp>
0 1:0.315435312636
0 2:0.717401267519
0 3:0.610065014231
0 4:0.338456439588
0 5:1.0
0 6:0.153064307519
0 7:0.852967033589
0 8:0.768019348388
1 2:0.448266038659
1 3:0.487085283809
1 4:0.188655259501
1 5:0.783661737598
1 6:0.306918111505
1 7:0.604556191817
1 8:0.602579849017
2 3:0.581371449529
2 4:0.418472282992
2 5:0.53582812249
2 6:0.682166163703
2 7:0.323102032556
2 8:0.423163906496
3 4:0.490635099568
3 5:0.677411110625
3 6:0.573442817784
3 7:0.524085717939
3 8:0.545221358786
4 5:0.70092035809
4 6:0.312994493293
4 7:0.588840143462
4 8:0.545649700577
5 6:0.931299939089
5 7:0.394666273956
5 8:0.653530858086
6 7:0.797232402217
6 8:0.693360717958
7 8:0.478355342532
</hsp>