sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5F-6210-6246
X
>3U5B-2213-2249
X
>3KNI-A2513-A2491
X
>3OI1-A1753-A1715
X
>3OHZ-A1753-A1715
X
>3F1F-A1831-A1793
X
</seq>
<hsp>
0 1:0.18401505497
0 2:0.484866634037
0 3:0.737779831248
0 4:0.734760906525
0 5:0.742966699582
1 2:0.440607313103
1 3:0.776279202473
1 4:0.770084740721
1 5:0.767660796296
2 3:0.982834617279
2 4:0.985097700672
2 5:0.999999305915
3 4:0.0511440222996
3 5:0.143694356291
4 5:0.106952119436
</hsp>