sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A324-A106
X
>1FJG-A316-A96
X
>2VQF-A316-A96
X
>3F1E-A316-A96
X
>3F1G-A316-A96
X
>2VQE-A316-A96
X
>2J02-A316-A96
X
>2J00-A316-A96
X
>2UXC-A316-A96
X
>1XMQ-A316-A96
X
</seq>
<hsp>
0 1:0.472362777784
0 2:0.520565074956
0 3:0.714158322611
0 4:0.715228850274
0 5:0.746315235288
0 6:0.916814647602
0 7:0.926221389999
0 8:0.999999063498
0 9:0.779501417879
1 2:0.137315385445
1 3:0.447785428278
1 4:0.449154364675
1 5:0.427996231643
1 6:0.731196126443
1 7:0.744634604939
1 8:0.811852095002
1 9:0.48349241744
2 3:0.476692861417
2 4:0.479902184093
2 5:0.321476290048
2 6:0.61658478193
2 7:0.631167015799
2 8:0.70393406444
2 9:0.383166631009
3 4:0.0413447843261
3 5:0.599866729923
3 6:0.901471747672
3 7:0.905937628496
3 8:0.98270248713
3 9:0.652412860822
4 5:0.59901366364
4 6:0.900997866692
4 7:0.905859541064
4 8:0.985010124783
4 9:0.650275737256
5 6:0.385768477413
5 7:0.398128220445
5 8:0.475331842262
5 9:0.143257767422
6 7:0.0345008528077
6 8:0.202217467514
6 9:0.300995929539
7 8:0.188382308334
7 9:0.31036961709
8 9:0.384799449492
</hsp>