sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A403-A401
X
>3F1F-A1686-A1986
X
>2J01-A403-A401
X
>1FJG-A448-A451
X
>3KNK-A934-A855
X
>2UUB-A448-A451
X
>3F1E-A448-A451
X
>2VQF-A448-A451
X
>3U5B-2376-2363
X
>3U5F-6373-6360
X
</seq>
<hsp>
0 1:0.81822278677
0 2:0.0841426516634
0 3:0.865702846907
0 4:0.98987437547
0 5:0.850375090066
0 6:0.903701579469
0 7:0.817699672201
0 8:0.652836512896
0 9:0.643945465831
1 2:0.797759751682
1 3:0.732420513331
1 4:0.881675331019
1 5:0.740432535753
1 6:0.806981972224
1 7:0.709141520533
1 8:0.601327938168
1 9:0.599185133355
2 3:0.86644365754
2 4:0.999998117384
2 5:0.854512033833
2 6:0.911509128514
2 7:0.819805509864
2 8:0.656783062888
2 9:0.645031698382
3 4:0.243564550779
3 5:0.0725925585939
3 6:0.126342961644
3 7:0.0754778348384
3 8:0.318944099975
3 9:0.320839847984
4 5:0.215495446532
4 6:0.131933401877
4 7:0.268923638803
4 8:0.497671839474
4 9:0.505806024685
5 6:0.101941766101
5 7:0.058354098504
5 8:0.300280491481
5 9:0.305188729407
6 7:0.150387759067
6 8:0.38642050055
6 9:0.39252424882
7 8:0.253793664748
7 9:0.256755456196
8 9:0.0406192927408
</hsp>