sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQN-0552-0580
X
>1VQM-0552-0580
X
>3CMA-0552-0580
X
>3HHN-C47-C50
X
>3R8S-A2350-A2353
X
>3R8T-A2349-A2352
X
>2UUB-A705-A708
X
</seq>
<hsp>
0 1:0.0177141538321
0 2:0.0363627996391
0 3:0.970767349797
0 4:0.747274435875
0 5:0.736391859596
0 6:0.857390058146
1 2:0.0285358394543
1 3:0.968445257208
1 4:0.756269170609
1 5:0.746188463182
1 6:0.865116321449
2 3:0.968738861004
2 4:0.775212289594
2 5:0.765770944698
2 6:0.883125883226
3 4:0.945698766473
3 5:0.999998927779
3 6:0.946851069276
4 5:0.105471245085
4 6:0.156482988646
5 6:0.202093676346
</hsp>