sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3I56-02513-02650
X
>3CCM-02513-02650
X
>2J03-A1470-A1421
X
>2PXK-B32-B18
X
>1Q81-A2513-A2650
X
>1FJG-A559-A737
X
>3OH7-A201-A443
X
>2PXD-B32-B18
X
>3CCL-0694-0708
X
>2QA4-0178-0423
X
</seq>
<hsp>
0 1:0.0256545671568
0 2:0.482185329825
0 3:0.944544745709
0 4:0.0514927523163
0 5:1.0
0 6:0.562101713868
0 7:0.904136529249
0 8:0.888827838387
0 9:0.650408404494
1 2:0.474527322027
1 3:0.934083486286
1 4:0.0605612978178
1 5:0.989751932173
1 6:0.549254920366
1 7:0.892688605027
1 8:0.876731333791
1 9:0.637986056049
2 3:0.830143478576
2 4:0.454936909415
2 5:0.875635287221
2 6:0.50791068129
2 7:0.799949389552
2 8:0.761938636322
2 9:0.588611964669
3 4:0.917290609075
3 5:0.09767970683
3 6:0.405915115166
3 7:0.0747926848223
3 8:0.105767216271
3 9:0.336149211043
4 5:0.971661772329
4 6:0.535928425004
4 7:0.879154554195
4 8:0.862027659838
4 9:0.626371549719
5 6:0.464280896559
5 7:0.157385094446
5 8:0.152519115892
5 9:0.408317351128
6 7:0.36064489956
6 8:0.342097228183
6 9:0.124973967936
7 8:0.0939530551249
7 9:0.281310393362
8 9:0.282512220573
</hsp>