sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQ8-0470-0473
X
>3KNK-A513-A516
X
>1VQ4-0470-0473
X
>3CME-0470-0473
X
>3U5D-1391-1394
X
>3R8T-A499-A502
X
>3OH5-A513-A516
X
>2J01-A513-A516
X
</seq>
<hsp>
0 1:0.637184134044
0 2:0.175854448316
0 3:0.340437931668
0 4:0.558688219316
0 5:0.618868755691
0 6:0.519048284497
0 7:0.766512606261
1 2:0.604867818728
1 3:0.765869023663
1 4:0.492867510238
1 5:0.571280803842
1 6:0.571990350841
1 7:0.781429254874
2 3:0.421741612387
2 4:0.54497780104
2 5:0.52106613708
2 6:0.570315442707
2 7:0.745808667479
3 4:0.7773312269
3 5:0.830431035111
3 6:0.476584851992
3 7:1.0
4 5:0.387077799521
4 6:0.659670203224
4 7:0.484199151727
5 6:0.67459724632
5 7:0.515471158352
6 7:0.872219425035
</hsp>