sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCQ-02587-01339
X
>2OTJ-02587-01339
X
>1VQ4-02587-01339
X
>1VQL-02587-01339
X
>3CCU-02587-01339
X
>1YJN-02587-01339
X
>3CC2-02587-01339
X
>1M90-A2587-A1339
X
>1K9M-A2587-A1339
X
>3G71-02587-01339
X
</seq>
<hsp>
0 1:0.511537539714
0 2:0.999995107985
0 3:0.790731734786
0 4:0.38969303586
0 5:0.478258908629
0 6:0.68382224796
0 7:0.936746876565
0 8:0.917213676569
0 9:0.607113847019
1 2:0.638978011521
1 3:0.659094786805
1 4:0.285061960964
1 5:0.314527721054
1 6:0.232829723274
1 7:0.512922899968
1 8:0.496674086185
1 9:0.28364921831
2 3:0.705773014617
2 4:0.685835394006
2 5:0.67251860155
2 6:0.533290674266
2 7:0.469543628544
2 8:0.501955105607
2 9:0.419278831878
3 4:0.682588521753
3 5:0.784495567464
3 6:0.672247700778
3 7:0.537801389381
3 8:0.577006611565
3 9:0.624020744812
4 5:0.309465700102
4 6:0.399303121095
4 7:0.666005128546
4 8:0.628095891906
4 9:0.334465762697
5 6:0.439743938653
5 7:0.703669991202
5 8:0.674155687092
5 9:0.287249704493
6 7:0.370131715837
6 8:0.354534454026
6 9:0.308302625758
7 8:0.132025425384
7 9:0.499029335981
8 9:0.501960779687
</hsp>