sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QEX-01119-01165
X
>3CC7-01119-01165
X
>3CCQ-01119-01165
X
>3CCM-01119-01165
X
>1K9M-A1119-A1165
X
>1N8R-A1119-A1165
X
>1K8A-A1119-A1165
X
>3KNI-A2569-A2561
X
>1NJI-A1119-A1165
X
>2UUA-A1350-A1324
X
</seq>
<hsp>
0 1:0.401319885596
0 2:0.20480930001
0 3:0.363032217058
0 4:0.267890029708
0 5:0.230408237517
0 6:0.267931181503
0 7:0.853621954519
0 8:0.294012615234
0 9:0.662388373291
1 2:0.292854354816
1 3:0.290774129454
1 4:0.593010347393
1 5:0.551666020537
1 6:0.588008564277
1 7:0.504492414345
1 8:0.61734178248
1 9:0.379988776584
2 3:0.289824033541
2 4:0.375655396061
2 5:0.337608911199
2 6:0.368769437234
2 7:0.720553241102
2 8:0.389821766387
2 9:0.546499434767
3 4:0.482141532991
3 5:0.45285333564
3 6:0.476199583354
3 7:0.595418603705
3 8:0.495841554667
3 9:0.362152625254
4 5:0.0584760051433
4 6:0.035867523438
4 7:0.983644835411
4 8:0.0568287312472
4 9:0.760255584875
5 6:0.0583633194799
5 7:0.950039540058
5 8:0.0891601476369
5 9:0.730895582566
6 7:0.969416504521
6 8:0.0540366707335
6 9:0.748353230828
7 8:0.999995885984
7 9:0.297737661871
8 9:0.77082354693
</hsp>