sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHC-A1350-A1324
X
>3OHD-A1350-A1324
X
>3OI0-A1350-A1324
X
>3DIO-X124-X127
X
>3DIX-A124-A127
X
>3DIY-A124-A127
X
>3DJ0-A124-A127
X
>3DIG-X124-X127
X
</seq>
<hsp>
0 1:0.00416197165289
0 2:0.101742724877
0 3:0.945692575481
0 4:0.928190466861
0 5:0.934365167054
0 6:0.92135647401
0 7:0.930166037878
1 2:0.1015094032
1 3:0.945545541298
1 4:0.928092743902
1 5:0.934256540391
1 6:0.921228300272
1 7:0.930071546661
2 3:0.999999927842
2 4:0.986037852364
2 5:0.989062716156
2 6:0.978220117956
2 7:0.986320571844
3 4:0.0548089970936
3 5:0.0252014135957
3 6:0.047668899416
3 7:0.0277003798337
4 5:0.040652315676
4 6:0.0476112647188
4 7:0.0410513805061
5 6:0.0439138610413
5 7:0.0264681959191
6 7:0.029804959552
</hsp>