sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A1106-A1093
X
>3KNH-A1076-A1063
X
>3OHC-A1085-A1072
X
>1XMQ-A1080-A1067
X
>3OI0-A1085-A1072
X
>1FJG-A1085-A1072
X
</seq>
<hsp>
0 1:1.0
0 2:0.866893699312
0 3:0.908041451674
0 4:0.951232014947
0 5:0.955696686368
1 2:0.786846656596
1 3:0.502344752781
1 4:0.610947893874
1 5:0.537413735839
2 3:0.736255790942
2 4:0.42777808681
2 5:0.448212766002
3 4:0.648608544357
3 5:0.680140393662
4 5:0.254109773331
</hsp>