sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A411-A426
X
>3R8O-A411-A426
X
>2VQE-A418-A403
X
>2VQF-A418-A403
X
>3R8O-A426-A411
X
>2UUB-A418-A403
X
>3KNH-A409-A394
X
>3F1G-A418-A403
X
>3F1E-A418-A403
X
>3R8N-A426-A411
X
>2J02-A418-A403
X
>2J00-A418-A403
X
</seq>
<hsp>
0 1:0.314525311081
0 2:0.647721741837
0 3:0.701255985622
0 4:0.397138222109
0 5:0.766639100485
0 6:1.0
0 7:0.390728301707
0 8:0.383664484353
0 9:0.393912566715
0 10:0.542435584319
0 11:0.551933816028
1 2:0.481128942658
1 3:0.515922708697
1 4:0.45641597889
1 5:0.565342140532
1 6:0.831040067733
1 7:0.373614916027
1 8:0.362455803446
1 9:0.397142564586
1 10:0.391744415877
1 11:0.400647148393
2 3:0.404929090857
2 4:0.549343810355
2 5:0.163302780556
2 6:0.432742286243
2 7:0.415451899897
2 8:0.404062864877
2 9:0.648544613783
2 10:0.360209108349
2 11:0.348258768705
3 4:0.520009921399
3 5:0.38036573336
3 6:0.586132301047
3 7:0.549493671559
3 8:0.547865650122
3 9:0.572791153977
3 10:0.506780377636
3 11:0.510704036723
4 5:0.629223103127
4 6:0.858205335118
4 7:0.460558746501
4 8:0.446953888856
4 9:0.314521546507
4 10:0.56744941559
4 11:0.572663649594
5 6:0.33168170675
5 7:0.518440605163
5 8:0.508428940711
5 9:0.704125229691
5 10:0.429614083378
5 11:0.416097114183
6 7:0.67863983517
6 8:0.678327452824
6 9:0.937966020062
6 10:0.634635457595
6 11:0.617819906551
7 8:0.0332631643853
7 9:0.46131131724
7 10:0.276666528157
7 11:0.276194912519
8 9:0.448339718717
8 10:0.263771609063
8 11:0.262516934244
9 10:0.502290099468
9 11:0.513353253109
10 11:0.0277855745085
</hsp>