sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CMA-0491-0476
X
>1YHQ-0491-0476
X
>1VQ8-0491-0476
X
>3CPW-0491-0476
X
>2QA4-0631-0889
X
>3CME-0632-0890
X
>3CCR-0632-0890
X
>3CCS-0632-0890
X
>1K9M-A632-A890
X
>3U5D-12344-12266
X
>1QVG-0632-0890
X
>1K8A-A632-A890
X
</seq>
<hsp>
0 1:0.0421275699922
0 2:0.0425851980968
0 3:0.0389945302989
0 4:0.087662570018
0 5:0.0935894589196
0 6:0.131776482243
0 7:0.105742524114
0 8:0.128543915739
0 9:0.995958049276
0 10:0.120754396539
0 11:0.122147561187
1 2:0.0471760018688
1 3:0.0257188285457
1 4:0.0982258001219
1 5:0.0863538952905
1 6:0.11370082615
1 7:0.0888151062569
1 8:0.101901400729
1 9:0.981570711406
1 10:0.0964220800815
1 11:0.101104707214
2 3:0.0337975647572
2 4:0.113456001556
2 5:0.122363228773
2 6:0.149525733486
2 7:0.123442500384
2 8:0.133921130696
2 9:1.0
2 10:0.126148067732
2 11:0.130893250431
3 4:0.0942438242912
3 5:0.0944313660608
3 6:0.121501597233
3 7:0.0954100710408
3 8:0.106162635031
3 9:0.977854450452
3 10:0.096490683234
3 11:0.103782492315
4 5:0.0690043091277
4 6:0.109727627597
4 7:0.0884869207403
4 8:0.127571158864
4 9:0.972559467248
4 10:0.112866824229
4 11:0.11515987831
5 6:0.0758808068338
5 7:0.0576563592137
5 8:0.10609810118
5 9:0.949654883008
5 10:0.0966020956316
5 11:0.0923726397656
6 7:0.0290126088861
6 8:0.0666956785676
6 9:0.950350394484
6 10:0.0720201999267
6 11:0.0440022263866
7 8:0.0647905970418
7 9:0.95554907412
7 10:0.0640422300102
7 11:0.0409070087521
8 9:0.940077914946
8 10:0.0276553495651
8 11:0.0371940624288
9 10:0.930855257922
9 11:0.94869069082
10 11:0.0430417990869
</hsp>