sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHZ-A1588-A1237
X
>3OHJ-A1588-A1237
X
>3OHK-A1588-A1237
X
>3OI1-A1588-A1237
X
>3OH5-A1588-A1237
X
>3OH7-A1588-A1237
X
>3F1F-A1666-A1307
X
>3F1H-A1666-A1307
X
>2J03-A1588-A1237
X
>2J01-A1588-A1237
X
</seq>
<hsp>
0 1:0.318240295454
0 2:0.267726125889
0 3:0.13357968878
0 4:0.456677871692
0 5:0.48347131857
0 6:0.736266887099
0 7:0.725293824127
0 8:0.477859732834
0 9:0.472345324148
1 2:0.132935034188
1 3:0.369572825247
1 4:0.263601848371
1 5:0.308594094979
1 6:0.87643241823
1 7:0.868578596601
1 8:0.686361268937
1 9:0.673640074301
2 3:0.281858507244
2 4:0.271400041845
2 5:0.286739626842
2 6:0.866498690421
2 7:0.852005306924
2 8:0.58569523622
2 9:0.572279552887
3 4:0.484942751745
3 5:0.491949090929
3 6:0.812169333448
3 7:0.79401248371
3 8:0.417112347547
3 9:0.409802715221
4 5:0.0960329751706
4 6:0.955037420398
4 7:0.937663179084
4 8:0.689878942093
4 9:0.676394277384
5 6:1.0
5 7:0.980143636401
5 8:0.679815943738
5 9:0.666027538809
6 7:0.0791428577313
6 8:0.817292199363
6 9:0.829473911866
7 8:0.781856865769
7 9:0.794753549426
8 9:0.0449764325353
</hsp>