sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3V7E-C68-C65
X
>2QA4-0491-0476
X
>3CD6-0491-0476
X
>3OI1-A1145-A1198
X
>3CCJ-0632-0890
X
>3CCS-0491-0476
X
>3CCR-0491-0476
X
>2J03-A1145-A1198
X
>2J01-A1145-A1198
X
</seq>
<hsp>
0 1:0.92851384397
0 2:0.940415780909
0 3:0.999996928294
0 4:0.977660072918
0 5:0.956039353683
0 6:0.968780036402
0 7:0.953647184477
0 8:0.954431774242
1 2:0.0821917873563
1 3:0.169180390569
1 4:0.147006609405
1 5:0.0659206813052
1 6:0.118067574913
1 7:0.198996814234
1 8:0.202130046601
2 3:0.190294430155
2 4:0.10187672426
2 5:0.0521804815341
2 6:0.0913251892686
2 7:0.178762730744
2 8:0.182333488173
3 4:0.171329685072
3 5:0.164668590893
3 6:0.127908290282
3 7:0.137968851057
3 8:0.138468956424
4 5:0.0935207826147
4 6:0.0837186751805
4 7:0.153052780575
4 8:0.155351956798
5 6:0.0725715989664
5 7:0.176264164049
5 8:0.179544685887
6 7:0.115130537748
6 8:0.118410825548
7 8:0.00637732029532
</hsp>