sequences=14
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-1305-1304
X
>3R8N-V35-V34
X
>1YJW-0895-0894
X
>2QEX-0895-0894
X
>3PDR-X79-X78
X
>3CC7-0895-0894
X
>3R8N-A1445-A1444
X
>3CME-02517-02516
X
>1YJ9-02517-02516
X
>3CCV-02517-02516
X
>3CCL-02517-02516
X
>3CMA-02517-02516
X
>3CC4-02517-02516
X
>1VQN-02517-02516
X
</seq>
<hsp>
0 1:0.457977237422
0 2:0.522011848148
0 3:0.518486030866
0 4:0.442729980757
0 5:0.698996799403
0 6:0.999904256768
0 7:0.705760733707
0 8:0.680863445155
0 9:0.697498231788
0 10:0.612136053608
0 11:0.817890030779
0 12:0.719880293737
0 13:0.730440626741
1 2:0.552142825959
1 3:0.56011532194
1 4:0.451855480701
1 5:0.693137002644
1 6:0.776590647266
1 7:0.545518782077
1 8:0.545260410866
1 9:0.51401262514
1 10:0.409081390667
1 11:0.629649169693
1 12:0.535555328155
1 13:0.499475983345
2 3:0.304917834466
2 4:0.323828374335
2 5:0.315061336897
2 6:1.0
2 7:0.720261910483
2 8:0.590757784581
2 9:0.565950425663
2 10:0.533981265169
2 11:0.73913660523
2 12:0.671620785166
2 13:0.642770505118
3 4:0.225684340535
3 5:0.225919111682
3 6:0.84085725562
3 7:0.548497229886
3 8:0.395505941503
3 9:0.429929859321
3 10:0.433825860174
3 11:0.535215796078
3 12:0.470437230692
3 13:0.465453198562
4 5:0.365840080791
4 6:0.768786905476
4 7:0.455605671645
4 8:0.374537735149
4 9:0.411704165576
4 10:0.346271752341
4 11:0.505951841066
4 12:0.434752638955
4 13:0.436352858913
5 6:0.881976258784
5 7:0.651548305793
5 8:0.454968146383
5 9:0.454495814426
5 10:0.499894768228
5 11:0.586487323984
5 12:0.550248426443
5 13:0.53219794622
6 7:0.475090953386
6 8:0.456096947214
6 9:0.46805197514
6 10:0.485804311181
6 11:0.357390440939
6 12:0.402472999936
6 13:0.442472145474
7 8:0.289223533112
7 9:0.409024635402
7 10:0.354020983826
7 11:0.277225254624
7 12:0.238464422832
7 13:0.273803282008
8 9:0.163946451579
8 10:0.211665192333
8 11:0.17967562035
8 12:0.127672756135
8 13:0.169919591195
9 10:0.154113095757
9 11:0.267386565506
9 12:0.227256351907
9 13:0.218335703664
10 11:0.311284287437
10 12:0.248755653009
10 13:0.240872420973
11 12:0.106984350909
11 13:0.155341369742
12 13:0.0986529960166
</hsp>