sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2UUB-A421-A420
X
>3CC7-0204-0203
X
>3OI1-B58-B57
X
>3OI1-A743-A742
X
>3F1H-A2719-A2718
X
>3OHJ-A1316-A1315
X
>3OWW-B75-B74
X
>3CCJ-01844-01843
X
>3F1G-A587-A586
X
>3CXC-944-943
X
>2VQF-A587-A586
X
>2VQE-A587-A586
X
</seq>
<hsp>
0 1:0.999992847772
0 2:0.790123195447
0 3:0.615295039406
0 4:0.827040166348
0 5:0.795042335329
0 6:0.470192113285
0 7:0.606861305074
0 8:0.638320655222
0 9:0.777231098613
0 10:0.649734062274
0 11:0.732434874379
1 2:0.451548805435
1 3:0.505076333592
1 4:0.896619411358
1 5:0.869802452048
1 6:0.779065833336
1 7:0.623607511476
1 8:0.583691182839
1 9:0.660615783684
1 10:0.68658925896
1 11:0.738339125022
2 3:0.463587317768
2 4:0.7730269603
2 5:0.739397546318
2 6:0.507997588785
2 7:0.530243530265
2 8:0.432778657635
2 9:0.563039114487
2 10:0.544095056034
2 11:0.619348142739
3 4:0.56244978701
3 5:0.504078198555
3 6:0.40862734641
3 7:0.255493533591
3 8:0.246229314861
3 9:0.301845918377
3 10:0.284054283414
3 11:0.347172134505
4 5:0.163359785744
4 6:0.456847954215
4 7:0.399073672316
4 8:0.429760367497
4 9:0.400774804248
4 10:0.311012975881
4 11:0.338093564201
5 6:0.4393207035
5 7:0.374443431148
5 8:0.396900725921
5 9:0.320244463958
5 10:0.252852755363
5 11:0.255026506166
6 7:0.28662555362
6 8:0.326635016781
6 9:0.442786640554
6 10:0.284899855434
6 11:0.381811082657
7 8:0.285806789761
7 9:0.314553247481
7 10:0.17429362349
7 11:0.247169264416
8 9:0.277749466708
8 10:0.225534735674
8 11:0.345764839146
9 10:0.189461095931
9 11:0.171671612224
10 11:0.13882120752
</hsp>