sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A1464-A1480
X
>3CCR-089-088
X
>1VQ5-089-088
X
>3OHK-A2364-A2363
X
>1VQP-089-088
X
>3CD6-089-088
X
>3CCQ-089-088
X
>3HHN-E112-E111
X
>1FJG-A673-A672
X
>1XMQ-A673-A672
X
</seq>
<hsp>
0 1:1.0
0 2:0.934033531989
0 3:0.941610201603
0 4:0.963180473666
0 5:0.891549901118
0 6:0.987323738107
0 7:0.690476956725
0 8:0.926087765183
0 9:0.825968628229
1 2:0.239715211586
1 3:0.564395675573
1 4:0.29814821787
1 5:0.232626419078
1 6:0.250106325772
1 7:0.624684132438
1 8:0.375078644305
1 9:0.508475868939
2 3:0.365570637413
2 4:0.132984904942
2 5:0.138384993447
2 6:0.209972438898
2 7:0.488988279767
2 8:0.278322274953
2 9:0.382724600852
3 4:0.330092946516
3 5:0.402091655446
3 6:0.440210018437
3 7:0.464452840809
3 8:0.339529906344
3 9:0.345036255421
4 5:0.16560806529
4 6:0.1424725574
4 7:0.481327129836
4 8:0.209772630376
4 9:0.311033545136
5 6:0.174355354073
5 7:0.448966149181
5 8:0.24797502052
5 9:0.338567961379
6 7:0.496861996511
6 8:0.191985964289
6 9:0.317194325964
7 8:0.379972718368
7 9:0.276958143483
8 9:0.170697921785
</hsp>