sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YI2-01239-01237
X
>3F1H-A2294-A2293
X
>1VQL-0474-0472
X
>1VQK-0474-0472
X
>1VQK-0499-0496
X
>3CCV-0499-0496
X
>1YI2-0499-0496
X
>2YIE-X37-Z15
X
</seq>
<hsp>
0 1:0.445991308306
0 2:0.978250940202
0 3:0.999998509462
0 4:0.787978146747
0 5:0.685016403012
0 6:0.763185006693
0 7:0.830892881788
1 2:0.838961997307
1 3:0.866647392816
1 4:0.799901777034
1 5:0.692765150224
1 6:0.79621437018
1 7:0.791860253212
2 3:0.0489873064733
2 4:0.437879455396
2 5:0.430733336927
2 6:0.410925459041
2 7:0.603544003894
3 4:0.437210257805
3 5:0.440887245385
3 6:0.418023052358
3 7:0.626216770309
4 5:0.124838602095
4 6:0.138627487042
4 7:0.518436743394
5 6:0.127604488805
5 7:0.462431078817
6 7:0.46110134941
</hsp>