sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHD-A474-A475
X
>3G71-0497-0499
X
>3OI1-A493-A494
X
>1VQ7-0473-0474
X
>1YIT-0473-0474
X
>1N8R-A473-A474
X
</seq>
<hsp>
0 1:0.990011149642
0 2:0.807798814949
0 3:0.982987878674
0 4:0.903405247055
0 5:0.999983712725
1 2:0.528299483048
1 3:0.483159707431
1 4:0.542062928858
1 5:0.614433787357
2 3:0.264671741874
2 4:0.279381946508
2 5:0.404441013357
3 4:0.217214423109
3 5:0.293003620205
4 5:0.17947440709
</hsp>