sequences=17
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3L3C-R57-R56
X
>2ZJR-X428-X427
X
>1VQ6-02580-02579
X
>2ZJR-X1870-X1869
X
>1VQL-0944-0943
X
>3OH5-A871-A870
X
>3OH5-A37-A36
X
>3OHJ-A37-A36
X
>3CMA-01733-01732
X
>3CC7-0596-0595
X
>3CCJ-0596-0595
X
>3CCQ-0596-0595
X
>3CMA-0596-0595
X
>1VQN-0596-0595
X
>1YHQ-0596-0595
X
>3CC2-0596-0595
X
>1JJ2-0596-0595
X
</seq>
<hsp>
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0 2:0.405205730898
0 3:0.331625957028
0 4:0.183993002771
0 5:0.277467090546
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</hsp>