sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3SUX-X6-X5
X
>2J02-A1152-A1151
X
>1G59-B43-B42
X
>3F1H-A869-A868
X
>3PDR-X29-X28
X
>3D0X-A117-A116
X
>3CD6-950-949
X
>1VQ7-0528-0527
X
>1VQ6-950-949
X
>1VQN-0528-0527
X
>3G6E-0528-0527
X
>3CC7-992-991
X
</seq>
<hsp>
0 1:0.750794165511
0 2:0.657871441305
0 3:0.603839745137
0 4:0.508924105888
0 5:0.741440785315
0 6:0.548611448675
0 7:0.668680886733
0 8:0.669184950797
0 9:0.670362078939
0 10:0.680008868899
0 11:0.671421668661
1 2:0.719574434838
1 3:0.689725282983
1 4:0.561219661802
1 5:0.999997574012
1 6:0.675045359107
1 7:0.739850457676
1 8:0.936042735151
1 9:0.79458423552
1 10:0.775434735075
1 11:0.905179487207
2 3:0.387997505814
2 4:0.277308093031
2 5:0.381392009701
2 6:0.212880012004
2 7:0.224021744612
2 8:0.420793503862
2 9:0.335749114818
2 10:0.307618027061
2 11:0.396603908474
3 4:0.271184077244
3 5:0.403334398439
3 6:0.299006896942
3 7:0.329088806504
3 8:0.427029981368
3 9:0.367252659748
3 10:0.334489631164
3 11:0.36000664459
4 5:0.464278294576
4 6:0.138646881883
4 7:0.232265483352
4 8:0.404060857884
4 9:0.288252526258
4 10:0.26349854178
4 11:0.365894900966
5 6:0.359710770519
5 7:0.319936114479
5 8:0.240097968525
5 9:0.320811357913
5 10:0.307855252841
5 11:0.22426025333
6 7:0.165177405334
6 8:0.291327207325
6 9:0.232861741761
6 10:0.187343155264
6 11:0.266263622271
7 8:0.303937698665
7 9:0.132491610348
7 10:0.104376094965
7 11:0.272484358974
8 9:0.271982503185
8 10:0.235728493006
8 11:0.106174364454
9 10:0.103809153329
9 11:0.258226471838
10 11:0.20850129874
</hsp>