sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OI0-A693-A692
X
>1S72-0623-0622
X
>3R8N-A1337-A1336
X
>1YJW-0623-0622
X
>3OH7-A1175-A1174
X
>2YIE-Z6-Z5
X
>2J03-A2475-A2474
X
>3F1F-A1245-A1244
X
>3GX2-A11-A10
X
>2OTJ-0568-0567
X
</seq>
<hsp>
0 1:0.580894316363
0 2:0.277593450595
0 3:0.447214400474
0 4:0.411498298296
0 5:0.672374090818
0 6:0.889996277396
0 7:0.931191538116
0 8:0.718349388888
0 9:0.870685907402
1 2:0.755683061865
1 3:0.205825399329
1 4:0.677918709851
1 5:0.568866973271
1 6:0.619711148567
1 7:0.839202391321
1 8:0.803485418082
1 9:0.99999750436
2 3:0.591595287129
2 4:0.35992935269
2 5:0.693302255049
2 6:0.901646689522
2 7:0.857608568805
2 8:0.625359025267
2 9:0.727789968697
3 4:0.487696046561
3 5:0.490084445249
3 6:0.594236019202
3 7:0.749960156099
3 8:0.655046261448
3 9:0.857181162233
4 5:0.699314084773
4 6:0.796531955144
4 7:0.811024515646
4 8:0.521675359257
4 9:0.698131551106
5 6:0.435496097632
5 7:0.399658542927
5 8:0.549153510784
5 9:0.627797125961
6 7:0.375018995475
6 8:0.520542841923
6 9:0.630559318846
7 8:0.481656798756
7 9:0.460940859666
8 9:0.262532503569
</hsp>