sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YIT-0153-0152
X
>3OH7-A726-A725
X
>3OHJ-A199-A198
X
>3OHZ-A176-A175
X
>1Q81-A153-A152
X
>2V3C-M69-M68
X
>3G6E-01754-01753
X
>1Q86-A1754-A1753
X
>3CMA-02058-02057
X
>3R8T-A1424-A1423
X
</seq>
<hsp>
0 1:0.639579628937
0 2:0.343294174258
0 3:0.577995847745
0 4:0.214329648364
0 5:0.749381102573
0 6:0.611540336593
0 7:0.607198502695
0 8:0.491840240512
0 9:0.799033329948
1 2:0.538225019246
1 3:0.615319357777
1 4:0.640366082077
1 5:0.644144558557
1 6:0.412631146813
1 7:0.620449647706
1 8:0.615547198537
1 9:0.658187208666
2 3:0.503515975627
2 4:0.342769606957
2 5:0.657825553622
2 6:0.628283600868
2 7:0.697632655822
2 8:0.456013195677
2 9:0.71147835466
3 4:0.401619551476
3 5:1.0
3 6:0.85374984266
3 7:0.855811658172
3 8:0.640251187334
3 9:0.782838832082
4 5:0.843990052068
4 6:0.689985691627
4 7:0.650040433956
4 8:0.470831653017
4 9:0.751566563423
5 6:0.446623222042
5 7:0.571807679931
5 8:0.565485512776
5 9:0.618927525624
6 7:0.318394642836
6 8:0.526492370943
6 9:0.593095672737
7 8:0.413736911309
7 9:0.487069753448
8 9:0.351669736293
</hsp>