sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A290-A289
X
>2UUA-A290-A289
X
>1KNZ-W2-W1
X
>1YIT-992-991
X
>1JJ2-950-949
X
>1NJI-B50-B49
X
>1YIJ-950-949
X
>1VQ8-950-949
X
>1YIT-950-949
X
>3CCU-950-949
X
</seq>
<hsp>
0 1:0.42749979729
0 2:0.544602784178
0 3:0.647341730947
0 4:0.800820470357
0 5:0.749156886778
0 6:0.740911871124
0 7:0.805020755999
0 8:0.749410508179
0 9:0.917396925091
1 2:0.643273953465
1 3:0.534842580401
1 4:0.843375437158
1 5:0.793972309354
1 6:0.763505688202
1 7:0.69960457839
1 8:0.726128517853
1 9:0.852912152523
2 3:0.480640739179
2 4:0.99999766832
2 5:0.938577770314
2 6:0.824578935341
2 7:0.958441029517
2 8:0.780255341866
2 9:0.947645161412
3 4:0.826168992891
3 5:0.744643528911
3 6:0.630712891168
3 7:0.678691782802
3 8:0.526425319388
3 9:0.654247677766
4 5:0.106452697041
4 6:0.250989027928
4 7:0.297296070258
4 8:0.354541234798
4 9:0.397949340473
5 6:0.20235921153
5 7:0.274353733966
5 8:0.289650842995
5 9:0.359462278682
6 7:0.287004777979
6 8:0.134733772275
6 9:0.240750849419
7 8:0.284979736862
7 9:0.290667572206
8 9:0.202891615216
</hsp>