sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A909-A910
X
>3F1F-A2688-A2689
X
>3F1F-A1659-A1660
X
>3KNK-A1580-A1581
X
>1FFK-01928-01929
X
>1K9M-A1975-A1976
X
>2DU4-C2-C3
X
>1DDY-E18-E19
X
</seq>
<hsp>
0 1:0.914461169532
0 2:0.872776551168
0 3:0.925301028972
0 4:0.966019685209
0 5:0.999995176467
0 6:0.862148203869
0 7:0.947932108993
1 2:0.428805756773
1 3:0.37874206039
1 4:0.29881269868
1 5:0.255982259315
1 6:0.52945855752
1 7:0.456573583592
2 3:0.484345827005
2 4:0.417826588063
2 5:0.472200448662
2 6:0.61462986634
2 7:0.529897906856
3 4:0.29511905497
3 5:0.321761879776
3 6:0.309276429373
3 7:0.254492091844
4 5:0.130783191036
4 6:0.337261917008
4 7:0.218603124517
5 6:0.395286434149
5 7:0.273651931749
6 7:0.17416122288
</hsp>